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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
102
ChIP-seq
37
DNase-seq
12
ATAC-seq
4
Hi-C
4
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
408
Transcription
102
DNA binding
49
DNA accessibility
4
3D chromatin structure
4
DNA methylation
Target of assay
80
histone
80
histone modification
54
broad histone mark
26
narrow histone mark
22
control
Date released
392
February, 2021
70
October, 2019
39
August, 2017
33
June, 2019
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
Available data
556
bam
516
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
568
Homo sapiens
Biosample type
567
tissue
2
primary cell
Organ
583
connective tissue
474
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
569
AMP
Genome assembly (visualization)
501
hg19
497
GRCh38
Lab
569
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Maike Sander, UCSD
files.file_type!
fastq
BIOSAMPLE
ASSAY
569 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
muscle of leg
7
13
1
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primary cell
mesenchymal stem cell of adipose
1
1
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