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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
total RNA-seq
Assay category
49
DNA binding
44
DNA accessibility
4
Transcription
Target of assay
49
histone
49
histone modification
34
broad histone mark
15
narrow histone mark
Date released
53
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
Available data
97
bam
93
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
1
tagAlign
Organism
97
Homo sapiens
Biosample type
97
tissue
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
97
AMP
Genome assembly (visualization)
97
GRCh38
97
hg19
Lab
97
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
tissue
tibial nerve
24
2
1
4
tibial artery
18
2
1
muscle of leg
6
13
muscle of arm
17
distal epiphysis of femur
1
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