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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
27
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
1
DNA accessibility
Target of assay
22
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
February, 2021
2
July, 2019
2
November, 2017
Available data
29
bam
10
tsv
7
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
fastq
hdf5
2
tagAlign
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
43
Homo sapiens
Biosample type
28
tissue
13
primary cell
2
cell line
Organ
310
pancreas
259
liver
228
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
67
adipose tissue
66
brain
55
eye
43
musculature of body
43
vasculature
41
blood vessel
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
43
AMP
Genome assembly (visualization)
GRCh38
163
hg19
Lab
43
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Maike Sander, UCSD
assembly!
GRCh38
files.file_type!
hdf5
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
RRBS
WGBS
pCHi-C
tissue
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
2
1
choroid plexus epithelial cell
1
1
brain microvascular endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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