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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
DNase-seq
8
ChIP-seq
Assay category
11
DNA accessibility
8
DNA binding
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
control
2
narrow histone mark
2
transcription factor
Date released
7
June, 2019
6
November, 2017
6
October, 2019
Available data
185
bam
155
bigWig
133
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
19
Homo sapiens
Biosample type
14
primary cell
5
tissue
Organ
482
pancreas
467
liver
275
epithelium
109
connective tissue
78
kidney
60
blood
60
bodily fluid
57
brain
48
musculature of body
46
adipose tissue
36
limb
30
heart
27
embryo
24
spleen
19
vasculature
18
ureter
14
blood vessel
4
artery
4
eye
4
vein
2
nerve
Project
19
AMP
Genome assembly (visualization)
18
hg19
15
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
19 results
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DNase-seq
ChIP-seq
primary cell
brain microvascular endothelial cell
1
3
choroid plexus epithelial cell
1
3
endothelial cell of umbilical vein
2
2
kidney capillary endothelial cell
1
smooth muscle cell of the brain vasculature
1
tissue
coronary artery
2
tibial artery
2
ascending aorta
1
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