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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
9
DNase-seq
6
single cell RNA-seq
6
total RNA-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
12
DNA accessibility
12
Transcription
5
3D chromatin structure
3
DNA methylation
Date released
9
July, 2019
7
October, 2019
6
August, 2021
5
June, 2019
4
March, 2020
2
February, 2020
Available data
19
bigWig
18
bam
13
tsv
12
bed narrowPeak
11
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
33
Homo sapiens
Biosample type
21
tissue
12
primary cell
Organ
727
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
21
hg19
16
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
lab.title!
Maike Sander, UCSD
organ_slims!
heart
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
33 results
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DNase-seq
single cell RNA-seq
total RNA-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
4
1
1
2
1
tibial artery
2
1
1
ascending aorta
1
2
thoracic aorta
2
1
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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