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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
55
DNA binding
9
DNA accessibility
9
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
control
4
RNA binding protein
4
transcription factor
Date released
36
May, 2019
19
October, 2019
9
July, 2019
5
June, 2019
4
August, 2021
4
March, 2020
4
November, 2017
1
February, 2020
Available data
70
bam
68
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
82
Homo sapiens
Biosample type
51
tissue
31
primary cell
Organ
892
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
159
bone element
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
70
hg19
63
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
lab.title!
Maike Sander, UCSD
target.investigated_as!
control
organ_slims!
artery
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
WGBS
ATAC-seq
FAIRE-seq
RRBS
pCHi-C
tissue
aorta
11
1
1
4
2
1
ascending aorta
13
1
2
thoracic aorta
12
2
1
primary cell
endothelial cell of umbilical vein
15
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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