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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
206
DNase-seq
78
ChIP-seq
2
ATAC-seq
Assay category
78
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
60
November, 2017
17
August, 2017
1
October, 2017
Available data
1200
bam
963
bigWig
905
bed narrowPeak
739
fastq
559
bigBed narrowPeak
251
tagAlign
78
bed broadPeak
63
bigBed broadPeak
41
bed bed3+
3
tar
1
tagAlign bed3+
Organism
76
Homo sapiens
Biosample type
50
cell line
15
tissue
13
primary cell
Organ
50
liver
11
brain
5
musculature of body
4
epithelium
4
pancreas
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
78
AMP
Genome assembly (visualization)
78
hg19
55
GRCh38
Lab
78
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
lab.title!
Maike Sander, UCSD
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
cell line
HepG2
50
tissue
skeletal muscle tissue
5
islet of Langerhans
2
pancreas
2
brain
1
caudate nucleus
1
+ See 4 more…
primary cell
skeletal muscle myoblast
7
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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