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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
78
ATAC-seq
29
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
Transcription
247
DNA binding
108
DNA accessibility
4
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
transcription factor
7
control
1
chromatin remodeller
Date released
117
May, 2021
47
June, 2019
46
August, 2017
46
September, 2018
45
May, 2020
21
October, 2019
9
November, 2017
7
August, 2020
5
September, 2017
4
July, 2019
4
May, 2019
3
August, 2021
3
September, 2020
1
February, 2021
1
November, 2020
Available data
359
bigWig
357
bam
295
bed narrowPeak
161
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
359
Homo sapiens
Biosample type
855
tissue
418
cell line
359
primary cell
132
in vitro differentiated cells
3
stem cell
Organ
121
epithelium
90
pancreas
27
vasculature
22
blood vessel
22
kidney
17
brain
17
connective tissue
15
vein
9
musculature of body
6
heart
6
liver
3
eye
Project
265
AMP
84
T1D
10
HPAP
Genome assembly (visualization)
342
hg19
267
GRCh38
Lab
232
AMP-T2D consortium
117
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
27
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
assay_slims!
Transcription
BIOSAMPLE
ASSAY
359 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
monocyte
84
2
CD8-positive, alpha-beta T cell
33
2
pancreatic endocrine cell
23
pancreatic alpha cell
7
13
pancreatic beta cell
7
10
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