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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
2
WGBS
1
DNase-seq
pCHi-C
Assay category
36
DNA accessibility
23
DNA binding
9
Transcription
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
October, 2019
6
August, 2021
3
February, 2020
2
February, 2021
2
July, 2019
1
June, 2019
Available data
36
bed narrowPeak
26
bam
9
tsv
2
bigWig
2
tagAlign
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
70
Homo sapiens
Biosample type
62
tissue
6
primary cell
2
cell line
Organ
286
pancreas
223
kidney
213
epithelium
202
heart
164
liver
120
brain
91
connective tissue
88
bone element
70
blood vessel
70
vasculature
63
adipose tissue
48
artery
26
limb
23
eye
22
musculature of body
19
lung
14
blood
14
bodily fluid
12
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
lymph node
1
pituitary gland
1
skin of body
1
spinal cord
Project
70
AMP
Genome assembly (visualization)
187
GRCh38
hg19
Lab
70
AMP-T2D consortium
lab.title!
Mark McCarthy, Oxford
assay_title!
pCHi-C
assembly!
hg19
BIOSAMPLE
ASSAY
70 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
DNase-seq
tissue
coronary artery
35
2
1
aorta
2
4
2
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 1 more…
primary cell
endothelial cell of umbilical vein
5
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
2
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