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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
112
ChIP-seq
35
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
5
RRBS
5
small RNA-seq
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
112
DNA binding
43
DNA accessibility
12
DNA methylation
6
3D chromatin structure
Target of assay
65
histone
65
histone modification
40
broad histone mark
30
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
83
August, 2017
44
June, 2019
23
October, 2018
22
July, 2019
7
May, 2019
4
February, 2020
4
March, 2020
2
January, 2018
2
May, 2022
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
499
bam
493
bigWig
408
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
45
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
583
Homo sapiens
Biosample type
568
tissue
16
primary cell
Organ
943
pancreas
788
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
584
AMP
Genome assembly (visualization)
499
hg19
477
GRCh38
Lab
584
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
lab.title!
Mark McCarthy, Oxford
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
584 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
4
1
1
1
subcutaneous adipose tissue
7
12
1
1
1
muscle of leg
7
13
1
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
mesenchymal stem cell of adipose
1
1
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