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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1742
ChIP-seq
1402
total RNA-seq
426
ATAC-seq
293
single cell RNA-seq
193
DNase-seq
86
RNA microarray
84
snATAC-seq
57
pCHi-C
28
WGBS
26
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
4
DNA accessibility
Date released
2
August, 2021
2
July, 2019
1
August, 2017
1
November, 2018
Available data
4
bam
4
bed narrowPeak
4
bigBed narrowPeak
4
bigWig
2
bed bed3+
2
fastq
Organism
6
Homo sapiens
Biosample type
4
tissue
2
in vitro differentiated cells
Organ
4
pancreas
epithelium
2
connective tissue
1
blood vessel
1
brain
1
kidney
1
vasculature
1
vein
Project
6
AMP
Genome assembly (visualization)
6
hg19
Lab
4
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
lab.title!
Mark McCarthy, Oxford
organ_slims!
epithelium
BIOSAMPLE
ASSAY
6 results
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FAIRE-seq
Capture-C
tissue
frontal cortex
1
islet of Langerhans
1
kidney
1
pancreas
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
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