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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1718
ChIP-seq
1053
total RNA-seq
504
ATAC-seq
365
single cell RNA-seq
203
DNase-seq
86
RNA microarray
84
snATAC-seq
69
WGBS
52
pCHi-C
33
Hi-C
20
RRBS
15
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Date released
87
February, 2021
2
December, 2019
Available data
84
txt
5
tsv
Organism
89
Homo sapiens
Biosample type
89
tissue
Organ
84
bone element
5
kidney
1
adipose tissue
connective tissue
1
epithelium
Project
89
AMP
Lab
89
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
lab.title!
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
89 results
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RNA microarray
snDrop-seq
tissue
bone element
84
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
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