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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
685
ChIP-seq
249
total RNA-seq
71
ATAC-seq
15
pCHi-C
8
Hi-C
6
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
2
HiChIP
2
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
Date released
2
October, 2019
1
August, 2017
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
2
bed broadPeak
2
bigBed broadPeak
1
bed bed3+
1
fastq
Organism
3
Homo sapiens
Biosample type
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
1
connective tissue
1
epithelium
1
kidney
1
pancreas
Project
3
AMP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
3
AMP-T2D consortium
lab.title!
Mark McCarthy, Oxford
biosample_type!
primary cell
tissue
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
3 results
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DNase-seq
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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