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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1102
total RNA-seq
1004
ChIP-seq
307
ATAC-seq
177
DNase-seq
175
single cell RNA-seq
87
RNA microarray
37
pCHi-C
28
snATAC-seq
23
WGBS
21
Hi-C
13
small RNA-seq
10
MeRIP-seq
10
RRBS
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
177
DNA accessibility
Date released
163
June, 2019
6
November, 2018
6
October, 2019
2
August, 2017
Available data
177
bam
177
bed narrowPeak
177
bigBed narrowPeak
177
bigWig
175
bed broadPeak
175
bigBed broadPeak
174
bed bed3+
8
fastq
Organism
177
Homo sapiens
Biosample type
174
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
177
AMP
Genome assembly (visualization)
177
GRCh38
161
hg19
Lab
177
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
biosample_type!
primary cell
organ_slims!
liver
BIOSAMPLE
ASSAY
177 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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