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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1563
ChIP-seq
1281
total RNA-seq
328
ATAC-seq
175
single cell RNA-seq
149
DNase-seq
87
RNA microarray
39
pCHi-C
27
WGBS
27
snATAC-seq
18
Hi-C
15
small RNA-seq
10
MeRIP-seq
7
RRBS
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
149
DNA accessibility
Date released
131
June, 2019
9
November, 2018
6
October, 2019
3
August, 2017
Available data
148
bam
148
bed narrowPeak
148
bigBed narrowPeak
148
bigWig
146
bed broadPeak
146
bigBed broadPeak
145
bed bed3+
11
fastq
Organism
149
Homo sapiens
Biosample type
146
tissue
primary cell
2
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
musculature of body
27
brain
27
heart
18
ureter
8
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
149
AMP
Genome assembly (visualization)
148
GRCh38
132
hg19
Lab
149
AMP-T2D consortium
lab.title!
Mark McCarthy, Oxford
biosample_type!
primary cell
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
149 results
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DNase-seq
tissue
heart
18
brain
14
kidney
13
renal cortex interstitium
11
renal pelvis
10
+ See 36 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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