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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
91
ATAC-seq
17
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
397
DNA binding
93
DNA accessibility
18
Transcription
Target of assay
241
transcription factor
85
histone
85
histone modification
68
control
66
recombinant protein
50
broad histone mark
35
narrow histone mark
34
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
4
March, 2023
3
March, 2019
1
August, 2018
1
August, 2022
1
October, 2022
Available data
383
bam
372
bed narrowPeak
328
bigWig
315
fastq
306
bigBed narrowPeak
78
tagAlign
64
bed broadPeak
58
bigBed broadPeak
10
bed bed3
7
txt
4
bed bed3+
4
tsv
3
bed bedgraph
3
tar
Organism
513
Homo sapiens
Biosample type
321
cell line
177
tissue
primary cell
16
in vitro differentiated cells
Organ
315
liver
83
brain
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
19
pancreas
15
epithelium
14
connective tissue
8
bone element
8
skeleton
1
adipose tissue
Project
491
AMP
23
T1D
Genome assembly (visualization)
317
hg19
309
GRCh38
Lab
488
AMP-T2D consortium
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
biosample_type!
primary cell
BIOSAMPLE
ASSAY
514 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
cell line
HepG2
315
EndoC_BH1
3
2
1
tissue
coronary artery
35
layer of hippocampus
22
islet of Langerhans
11
5
2
retina
15
2
caudate nucleus
15
+ See 12 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
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