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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
99
single cell RNA-seq
74
total RNA-seq
49
ATAC-seq
30
DNase-seq
10
WGBS
4
Hi-C
4
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
197
DNA binding
174
Transcription
79
DNA accessibility
11
DNA methylation
4
3D chromatin structure
Target of assay
147
histone
147
histone modification
93
broad histone mark
54
narrow histone mark
32
control
18
transcription factor
12
RNA binding protein
Date released
98
August, 2021
66
February, 2021
66
May, 2019
57
April, 2019
40
May, 2024
36
February, 2023
34
October, 2019
28
June, 2019
26
July, 2019
10
March, 2020
5
February, 2020
3
May, 2021
Available data
278
bam
278
bigWig
244
bed narrowPeak
177
tsv
145
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
4
bedpe bed3+
4
hic
Organism
469
Homo sapiens
Biosample type
402
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
598
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
469
AMP
Genome assembly (visualization)
320
GRCh38
242
hg19
Lab
429
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
lab.title!
Mark McCarthy, Oxford
biosample_type!
primary cell
BIOSAMPLE
ASSAY
469 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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