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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
65
total RNA-seq
53
ATAC-seq
39
DNase-seq
6
single cell RNA-seq
5
Hi-C
3
WGBS
1
pCHi-C
Assay category
122
DNA binding
92
DNA accessibility
71
Transcription
5
3D chromatin structure
3
DNA methylation
Target of assay
85
histone
85
histone modification
56
broad histone mark
30
control
29
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
72
February, 2021
69
October, 2019
57
May, 2019
35
February, 2023
35
June, 2019
12
July, 2019
6
August, 2021
5
February, 2020
3
March, 2020
Available data
241
bam
196
bigWig
183
bed narrowPeak
126
bigBed narrowPeak
72
tsv
39
bed bed3+
39
bed broadPeak
39
bigBed broadPeak
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hic
Organism
294
Homo sapiens
Biosample type
228
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
598
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
294
AMP
Genome assembly (visualization)
244
GRCh38
209
hg19
Lab
294
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
biosample_type!
primary cell
BIOSAMPLE
ASSAY
294 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
5
1
36
2
tibial nerve
35
5
1
2
tibial artery
23
1
1
2
aorta
13
1
4
1
2
1
muscle of leg
7
13
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
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