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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
187
single cell RNA-seq
178
ATAC-seq
133
ChIP-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
10
Hi-C
10
RRBS
2
DNase-seq
2
small RNA-seq
1
DNAme array
Assay category
436
Transcription
236
DNA accessibility
133
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
190
histone
190
histone modification
101
broad histone mark
narrow histone mark
35
control
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
48
February, 2021
48
July, 2018
44
September, 2018
43
April, 2018
31
July, 2019
24
August, 2017
17
October, 2019
8
January, 2021
8
June, 2019
7
August, 2020
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
May, 2019
1
November, 2018
Available data
506
bam
501
bigWig
369
fastq
270
tsv
191
bed narrowPeak
153
zippedFastqFolder
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
890
Homo sapiens
Biosample type
1998
tissue
890
primary cell
327
in vitro differentiated cells
298
cell line
9
stem cell
Organ
320
epithelium
293
pancreas
24
connective tissue
17
kidney
15
vasculature
13
blood vessel
10
brain
10
liver
8
blood
8
bodily fluid
8
vein
7
heart
5
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
401
AMP
324
HPAP
164
T1D
1
ITG
Genome assembly (visualization)
440
hg19
355
GRCh38
Lab
376
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
31
inconsistent ontology term
Audit category:
21
missing controlled_by
lab.title!
Mark McCarthy, Oxford
files.file_type!
bigBed narrowPeak
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
890 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
DNase-seq
small RNA-seq
DNAme array
primary cell
pancreatic alpha cell
52
12
29
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
12
16
9
16
1
exocrine cell
39
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