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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
248
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
47
WGBS
29
snATAC-seq
17
pCHi-C
10
RRBS
7
DNase-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
248
DNA binding
237
DNA accessibility
58
DNA methylation
6
3D chromatin structure
Target of assay
218
histone
218
histone modification
114
broad histone mark
104
narrow histone mark
27
control
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
566
bigWig
554
bam
382
fastq
270
tsv
248
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
1002
Homo sapiens
Biosample type
2603
tissue
1002
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
382
epithelium
343
pancreas
32
vasculature
28
blood vessel
23
kidney
22
connective tissue
21
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
503
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
584
hg19
489
GRCh38
Lab
468
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
audit script error
29
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
month_released!
June, 2019
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
1002 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
13
21
23
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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