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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
4
DNase-seq
Assay category
21
DNA binding
4
DNA accessibility
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
June, 2019
14
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
566
bigWig
554
bam
409
fastq
270
tsv
248
bed narrowPeak
153
zippedFastqFolder
100
tagAlign
62
bigBed narrowPeak
25
bed broadPeak
25
bigBed broadPeak
13
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
25
Homo sapiens
Biosample type
59
cell line
25
primary cell
13
tissue
1
in vitro differentiated cells
Organ
8
epithelium
8
vasculature
6
blood vessel
6
brain
4
vein
1
connective tissue
Project
25
AMP
Genome assembly (visualization)
25
hg19
21
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
1
inconsistent assembly
lab.title!
Mark McCarthy, Oxford
month_released!
June, 2019
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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