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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
48
ATAC-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
1
single cell RNA-seq
Assay category
197
DNA binding
48
DNA accessibility
10
Transcription
1
DNA methylation
Target of assay
172
histone
172
histone modification
93
broad histone mark
79
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
406
November, 2017
322
August, 2017
298
October, 2019
226
May, 2021
218
June, 2019
200
May, 2022
196
August, 2021
189
February, 2023
156
February, 2021
152
May, 2020
120
May, 2019
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
59
September, 2020
47
September, 2018
47
September, 2023
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2023
4
July, 2018
4
October, 2022
3
March, 2019
1
August, 2018
1
August, 2022
1
December, 2019
Available data
375
bigWig
349
bam
tsv
179
bed narrowPeak
90
tagAlign
73
fastq
14
bigBed narrowPeak
2
bed bed3+
1
csv
Organism
273
Homo sapiens
Biosample type
201
primary cell
53
in vitro differentiated cells
17
cell line
2
tissue
Organ
67
pancreas
55
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
171
AMP
102
T1D
Genome assembly (visualization)
189
hg19
149
GRCh38
Lab
184
Kyle Gaulton, UCSD
89
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
32
missing controlled_by
lab.title!
Mark McCarthy, Oxford
files.file_type!
tsv
BIOSAMPLE
ASSAY
273 results
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Clear Filters
ChIP-seq
ATAC-seq
pCHi-C
total RNA-seq
DNAme array
single cell RNA-seq
primary cell
monocyte
85
13
1
1
1
CD8-positive, alpha-beta T cell
33
1
2
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
+ See 16 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
cardiomyocytes
3
pancreatic PP cell
3
cell line
EndoC_BH1
1
16
tissue
pancreas
1
thymus
1
See all biosamples
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