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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
pCHi-C
1
total RNA-seq
Assay category
56
DNA binding
8
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
45
August, 2017
18
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
72
Homo sapiens
Biosample type
72
tissue
1
in vitro differentiated cells
Organ
501
pancreas
353
epithelium
319
kidney
277
liver
257
brain
205
heart
166
connective tissue
156
vasculature
151
blood vessel
115
limb
101
bone element
85
musculature of body
78
artery
73
adipose tissue
55
eye
38
nerve
20
embryo
20
vein
19
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
73
AMP
Genome assembly (visualization)
11
hg19
9
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
files.file_type!
tsv
hic
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
pCHi-C
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
2
adipose tissue
2
3
3
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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