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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
RRBS
17
WGBS
3
Hi-C
1
ChIP-seq
Assay category
36
DNA methylation
3
3D chromatin structure
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
23
July, 2019
7
November, 2018
6
August, 2017
3
October, 2022
1
October, 2019
Available data
3391
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
40
Homo sapiens
Biosample type
26
tissue
13
primary cell
1
cell line
Organ
9
epithelium
9
pancreas
8
heart
4
kidney
4
musculature of body
3
brain
3
connective tissue
3
liver
2
adipose tissue
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
37
AMP
3
HPAP
Genome assembly (visualization)
23
hg19
18
GRCh38
Lab
37
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
2
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
40 results
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Clear Filters
RRBS
WGBS
Hi-C
ChIP-seq
tissue
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
heart right ventricle
2
+ See 12 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 8 more…
cell line
HepG2
1
See all biosamples
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