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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ATAC-seq
1
ChIP-seq
Assay category
7
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
4
February, 2021
3
February, 2023
1
October, 2019
Available data
3391
bam
3169
bigWig
1817
bed narrowPeak
1600
tsv
1357
fastq
1042
bigBed narrowPeak
398
tagAlign
321
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
tissue
Organ
4
connective tissue
1
brain
Project
8
AMP
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
8 results
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ATAC-seq
ChIP-seq
in vitro differentiated cells
adipocyte
4
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
tissue
medial globus pallidus
1
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