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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
20
total RNA-seq
7
ChIP-seq
2
Hi-C
Assay category
26
DNA accessibility
20
Transcription
7
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
53
bam
31
bed narrowPeak
25
bigWig
20
tsv
2
bedpe bed3+
2
hic
Organism
55
Homo sapiens
Biosample type
40
tissue
10
cell line
5
in vitro differentiated cells
Organ
49
pancreas
10
epithelium
1
adipose tissue
1
connective tissue
Project
55
AMP
Genome assembly (visualization)
53
hg19
51
GRCh38
Lab
55
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
month_released!
November, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
55 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
7
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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