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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
151
ChIP-seq
40
single cell RNA-seq
16
total RNA-seq
3
ATAC-seq
Assay category
190
DNA accessibility
151
DNA binding
56
Transcription
Target of assay
111
histone
111
histone modification
66
broad histone mark
45
narrow histone mark
31
control
9
RNA binding protein
9
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
338
bam
310
bigWig
307
bed narrowPeak
307
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
41
fastq
19
zippedFastqFolder
Organism
397
Homo sapiens
Biosample type
278
tissue
119
primary cell
Organ
86
kidney
58
brain
57
vasculature
56
heart
55
blood vessel
50
musculature of body
44
epithelium
39
limb
25
pancreas
18
connective tissue
18
ureter
7
artery
7
eye
2
liver
1
adipose tissue
Project
338
AMP
59
HPAP
Genome assembly (visualization)
309
GRCh38
284
hg19
Lab
338
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
29
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
397 results
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Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
tissue
muscle of leg
13
7
heart
18
ascending aorta
1
16
muscle of arm
17
thoracic aorta
16
+ See 40 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 20 more…
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