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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
39
total RNA-seq
18
small RNA-seq
17
WGBS
15
RRBS
9
DNase-seq
6
Hi-C
4
ATAC-seq
4
single cell RNA-seq
3
FAIRE-seq
Assay category
70
DNA binding
61
Transcription
32
DNA methylation
16
DNA accessibility
6
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
9
control
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
160
bam
155
bigWig
88
fastq
78
bed narrowPeak
75
bigBed narrowPeak
60
tsv
29
bed bedMethyl
29
bigBed bedMethyl
11
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
2
hdf5
1
csv
Organism
185
Homo sapiens
Biosample type
96
tissue
61
cell line
28
primary cell
Organ
63
liver
25
heart
20
brain
19
connective tissue
15
blood
15
bodily fluid
13
adipose tissue
13
epithelium
13
pancreas
12
vasculature
blood vessel
11
kidney
10
musculature of body
9
spleen
5
limb
3
artery
2
pericardium
1
eye
Project
185
AMP
Genome assembly (visualization)
153
hg19
150
GRCh38
Lab
185
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
185 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
RRBS
DNase-seq
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
liver
4
2
1
2
spleen
6
2
1
body of pancreas
2
2
2
2
omental fat pad
4
1
1
+ See 23 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 17 more…
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