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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
total RNA-seq
71
ChIP-seq
25
ATAC-seq
4
Hi-C
2
pCHi-C
Assay category
122
Transcription
71
DNA binding
25
DNA accessibility
4
3D chromatin structure
Target of assay
52
histone
52
histone modification
28
narrow histone mark
24
broad histone mark
15
transcription factor
4
control
2
RNA binding protein
1
chromatin remodeller
Date released
88
May, 2021
38
December, 2017
31
February, 2018
29
August, 2021
18
February, 2021
6
March, 2020
6
October, 2019
5
November, 2019
3
February, 2023
Available data
210
bam
197
bigWig
122
tsv
86
bed narrowPeak
69
fastq
17
tagAlign
14
bigBed narrowPeak
12
bed bed3+
6
bedpe bed3+
4
hic
3
bed bedgraph
3
txt
2
ibed
Organism
224
Homo sapiens
Biosample type
1272
tissue
594
primary cell
530
cell line
224
in vitro differentiated cells
3
stem cell
Organ
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
224
AMP
Genome assembly (visualization)
224
hg19
211
GRCh38
4
hg18
Lab
216
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
106
inconsistent ontology term
Audit category:
11
inconsistent control read length
lab.title!
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
224 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
pancreatic endoderm
4
13
hepatocyte
14
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