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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
113
ChIP-seq
8
single cell RNA-seq
1
ATAC-seq
Assay category
198
DNA accessibility
113
DNA binding
8
Transcription
Target of assay
64
histone
64
histone modification
49
transcription factor
36
broad histone mark
28
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
70
November, 2017
39
August, 2017
9
November, 2018
9
October, 2019
6
February, 2021
4
October, 2017
1
September, 2018
Available data
2798
bam
2599
bigWig
1742
bed narrowPeak
1256
fastq
1122
tsv
1014
bigBed narrowPeak
376
tagAlign
311
bed broadPeak
276
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
313
Homo sapiens
Biosample type
215
tissue
59
cell line
45
primary cell
Organ
83
kidney
64
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
319
AMP
Genome assembly (visualization)
289
hg19
273
GRCh38
Lab
318
AMP-T2D consortium
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
audit script error
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
lab.title!
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
319 results
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DNase-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
tissue
heart
18
kidney
13
5
brain
14
3
muscle of arm
17
muscle of leg
13
+ See 43 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 15 more…
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