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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
3
ATAC-seq
2
pCHi-C
2
total RNA-seq
1
RNA microarray
Assay category
54
DNA binding
4
DNA methylation
3
DNA accessibility
2
Transcription
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
October, 2019
Available data
21
fastq
19
bam
8
tagAlign
3
bigWig
3
tsv
2
bed narrowPeak
bed broadPeak
1
bedpe bed3+
1
bigBed narrowPeak
Organism
65
Homo sapiens
Biosample type
65
tissue
1
in vitro differentiated cells
Organ
304
pancreas
246
liver
228
epithelium
149
kidney
127
heart
117
connective tissue
93
bone element
68
brain
66
adipose tissue
55
eye
43
vasculature
41
blood vessel
30
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
8
skeleton
8
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
66
AMP
Genome assembly (visualization)
423
hg19
GRCh38
Lab
66
AMP-T2D consortium
lab.title!
Mark McCarthy, Oxford
files.file_type!
bed broadPeak
assembly!
GRCh38
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
WGBS
ATAC-seq
pCHi-C
total RNA-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
3
1
in vitro differentiated cells
white fat cell
1
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