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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
17
DNA binding
13
DNA accessibility
9
Transcription
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
19
April, 2020
1
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
bedpe bed3+
1
tar
1
tsv
Organism
40
Homo sapiens
Biosample type
21
primary cell
20
tissue
Organ
937
pancreas
789
liver
683
connective tissue
519
epithelium
490
adipose tissue
390
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
22
AMP
19
LungMap
Genome assembly (visualization)
16
hg19
12
GRCh38
Lab
22
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
audit script error
lab.title!
Mark McCarthy, Oxford
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
DNase-seq
FAIRE-seq
Hi-C
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
tissue
lung
10
9
1
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