Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
46
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
DNA binding
66
Transcription
52
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Date released
60
February, 2021
35
February, 2023
8
July, 2019
6
August, 2021
4
June, 2019
3
February, 2020
3
March, 2020
3
October, 2019
Available data
76
bam
67
bigWig
67
tsv
52
bed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
bigBed narrowPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
122
Homo sapiens
Biosample type
60
cell line
60
tissue
2
primary cell
Organ
726
pancreas
531
connective tissue
418
adipose tissue
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
122
AMP
Genome assembly (visualization)
110
GRCh38
75
hg19
Lab
122
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
assay_slims!
DNA binding
organ_slims!
epithelium
BIOSAMPLE
ASSAY
122 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
2
aorta
1
4
2
1
1
tibial artery
1
1
2
ascending aorta
2
1
thoracic aorta
2
1
+ See 1 more…
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download