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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
200
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
115
narrow histone mark
60
broad histone mark
28
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
231
bam
212
bigWig
194
bed narrowPeak
118
bigBed narrowPeak
104
tagAlign
41
bed broadPeak
35
bed bed3+
35
bigBed broadPeak
26
tsv
8
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
267
Homo sapiens
Biosample type
249
tissue
18
primary cell
Organ
920
pancreas
643
connective tissue
515
epithelium
473
adipose tissue
453
liver
376
heart
344
kidney
267
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
267
AMP
Genome assembly (visualization)
207
GRCh38
155
hg19
Lab
267
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
target.investigated_as!
transcription factor
month_released!
October, 2017
BIOSAMPLE
ASSAY
267 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
23
brain
5
14
1
1
1
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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