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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
14
DNA binding
2
DNA methylation
1
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
January, 2019
6
November, 2018
4
December, 2018
1
March, 2020
October, 2017
Available data
17
bam
17
fastq
9
bigWig
7
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
18
Homo sapiens
Biosample type
18
tissue
Organ
920
pancreas
643
connective tissue
515
epithelium
473
adipose tissue
453
liver
376
heart
344
kidney
267
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
18
AMP
Genome assembly (visualization)
9
GRCh38
7
hg19
Lab
18
AMP-T2D consortium
lab.title!
Mark McCarthy, Oxford
target.investigated_as!
transcription factor
month_released!
October, 2017
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
14
2
1
1
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