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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
Assay category
103
DNA binding
Target of assay
203
histone
203
histone modification
103
narrow histone mark
100
broad histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
40
May, 2021
22
August, 2017
15
September, 2018
11
June, 2019
9
October, 2019
3
November, 2017
2
August, 2021
1
May, 2019
Available data
112
bigWig
104
bed narrowPeak
103
bam
47
tagAlign
40
fastq
26
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
2
bed bed3+
Organism
103
Homo sapiens
Biosample type
243
tissue
103
primary cell
41
in vitro differentiated cells
17
cell line
1
stem cell
Organ
35
epithelium
31
pancreas
8
vasculature
7
blood vessel
6
vein
5
kidney
4
connective tissue
4
musculature of body
3
brain
2
heart
2
liver
1
eye
Project
63
AMP
40
T1D
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
63
AMP-T2D consortium
40
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
103 results
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ChIP-seq
primary cell
monocyte
40
pancreatic endocrine cell
12
pancreatic ductal cell
7
endothelial cell of umbilical vein
6
skeletal muscle myoblast
6
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