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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
Assay category
125
DNA binding
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
52
May, 2021
24
August, 2017
15
June, 2019
15
September, 2018
9
October, 2019
6
November, 2017
2
August, 2021
2
May, 2019
Available data
122
bigWig
114
bed narrowPeak
113
bam
47
tagAlign
45
fastq
36
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
2
bed bed3+
Organism
125
Homo sapiens
Biosample type
352
tissue
125
primary cell
84
cell line
66
in vitro differentiated cells
1
stem cell
Organ
40
epithelium
31
pancreas
10
vasculature
8
blood vessel
7
kidney
6
brain
6
vein
5
connective tissue
4
musculature of body
3
heart
2
eye
2
liver
Project
85
AMP
40
T1D
Genome assembly (visualization)
122
hg19
111
GRCh38
Lab
75
AMP-T2D consortium
50
Kyle Gaulton, UCSD
Audit category:
12
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
125 results
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ChIP-seq
primary cell
monocyte
41
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
skeletal muscle myoblast
8
pancreatic ductal cell
7
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