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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
412
ChIP-seq
Assay category
412
DNA binding
DNA accessibility
Target of assay
244
transcription factor
88
histone
88
histone modification
77
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
120
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
November, 2020
4
October, 2022
3
June, 2018
1
March, 2019
Available data
398
bam
334
bigWig
330
fastq
313
bed narrowPeak
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
2
bed bed3+
Organism
412
Homo sapiens
Biosample type
315
cell line
88
tissue
9
primary cell
Organ
315
liver
91
brain
6
epithelium
6
pancreas
6
vasculature
3
blood vessel
Project
412
AMP
Genome assembly (visualization)
283
hg19
282
GRCh38
Lab
412
AMP-T2D consortium
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
412 results
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Clear Filters
ChIP-seq
cell line
HepG2
315
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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