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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
4
ATAC-seq
2
total RNA-seq
1
snATAC-seq
Assay category
209
DNA accessibility
53
DNA binding
5
3D chromatin structure
2
Transcription
Date released
187
June, 2019
9
November, 2018
7
October, 2019
4
February, 2023
2
May, 2021
1
May, 2022
1
November, 2020
Available data
1795
bam
1752
bigWig
1558
tsv
492
bed narrowPeak
473
fastq
241
bigBed narrowPeak
211
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
112
zippedFastqFolder
76
txt
64
xls
12
bed bed3
8
csv
7
bed bedgraph
1
tar
Organism
211
Homo sapiens
Biosample type
177
tissue
29
primary cell
4
in vitro differentiated cells
1
cell line
Organ
78
kidney
36
limb
34
musculature of body
32
brain
30
heart
18
ureter
16
epithelium
12
connective tissue
11
vasculature
9
blood vessel
7
pancreas
5
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
211
AMP
Genome assembly (visualization)
204
GRCh38
188
hg19
Lab
209
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
1
audit script error
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
211 results
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Clear Filters
DNase-seq
ATAC-seq
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 18 more…
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
Panc1
1
See all biosamples
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