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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
10
RRBS
9
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
254
Transcription
247
DNA binding
DNA accessibility
10
DNA methylation
9
3D chromatin structure
Target of assay
230
histone
230
histone modification
118
broad histone mark
112
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
43
April, 2018
42
August, 2017
31
July, 2019
23
June, 2019
21
October, 2019
9
November, 2017
5
December, 2019
4
May, 2019
4
November, 2020
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
February, 2021
2
October, 2018
1
March, 2020
Available data
505
bigWig
467
bam
252
tsv
226
bed narrowPeak
203
fastq
99
tagAlign
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
Organism
521
Homo sapiens
Biosample type
1467
tissue
521
primary cell
515
cell line
254
in vitro differentiated cells
3
stem cell
Organ
193
epithelium
163
pancreas
27
connective tissue
25
vasculature
21
blood vessel
21
kidney
16
brain
14
vein
11
musculature of body
10
liver
8
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
338
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
521
hg19
460
GRCh38
Lab
303
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
33
inconsistent ontology term
4
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
521 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
10
12
1
pancreatic beta cell
7
10
12
1
pancreatic ductal cell
13
4
10
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