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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
total RNA-seq
44
ChIP-seq
18
snATAC-seq
16
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
99
Transcription
44
DNA binding
29
DNA accessibility
Target of assay
86
histone
86
histone modification
44
broad histone mark
narrow histone mark
Date released
111
May, 2021
41
May, 2020
23
February, 2023
16
January, 2021
2
March, 2020
Available data
136
bam
136
bigWig
92
tsv
44
bed narrowPeak
44
tagAlign
Organism
193
Homo sapiens
Biosample type
159
primary cell
29
tissue
5
cell line
Organ
28
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3466
AMP
324
HPAP
193
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
136
GRCh38
136
hg19
Lab
191
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Audit category:
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
audit.ERROR.category!
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
193 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
44
1
peripheral blood mononuclear cell
8
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 29 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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