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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
105
total RNA-seq
ChIP-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
105
Transcription
13
DNA accessibility
Date released
68
May, 2021
45
May, 2020
23
February, 2023
January, 2021
4
March, 2020
Available data
98
bam
98
bigWig
98
tsv
Organism
140
Homo sapiens
Biosample type
112
primary cell
21
tissue
7
cell line
Organ
22
pancreas
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2499
AMP
324
HPAP
140
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
98
GRCh38
98
hg19
Lab
136
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
January, 2021
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
140 results
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total RNA-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
53
1
B cell
2
1
CD8-positive, alpha-beta T cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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tissue
islet of Langerhans
7
11
2
thymus
1
cell line
EndoC_BH1
2
3
2
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