Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
3
ChIP-seq
Assay category
DNA accessibility
52
Transcription
41
DNA methylation
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
74
May, 2022
19
September, 2020
3
November, 2017
Available data
3003
bam
2819
bigWig
1586
tsv
1325
bed narrowPeak
1256
fastq
801
bigBed narrowPeak
398
tagAlign
157
txt
114
bed broadPeak
93
zippedFastqFolder
79
bigBed broadPeak
64
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
96
Homo sapiens
Biosample type
93
primary cell
3
cell line
Organ
41
epithelium
41
pancreas
3
liver
Project
93
HPAP
3
AMP
Genome assembly (visualization)
3
hg19
Lab
93
Klaus Kaestner, Upenn
3
AMP-T2D consortium
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
96 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
WGBS
ChIP-seq
primary cell
Langerhans cell
52
pancreatic alpha cell
25
pancreatic beta cell
16
cell line
HepG2
3
Download