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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ATAC-seq
184
ChIP-seq
174
single cell RNA-seq
127
total RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
12
Hi-C
11
RRBS
10
WGBS
3
snDrop-seq
1
DNase-seq
Assay category
301
Transcription
225
DNA accessibility
184
DNA binding
21
DNA methylation
12
3D chromatin structure
Target of assay
161
histone
161
histone modification
81
broad histone mark
80
narrow histone mark
18
control
5
RNA binding protein
5
transcription factor
Date released
229
August, 2021
114
August, 2017
95
February, 2023
93
February, 2021
55
October, 2019
47
September, 2023
42
May, 2022
40
May, 2024
31
March, 2020
22
February, 2020
19
April, 2020
15
May, 2023
13
November, 2017
9
July, 2019
8
January, 2021
8
October, 2017
4
July, 2018
4
March, 2019
3
December, 2019
2
January, 2018
2
May, 2021
1
April, 2019
1
August, 2022
1
November, 2019
Available data
bam
1681
bigWig
1069
tsv
892
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
157
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
856
Homo sapiens
Biosample type
858
tissue
479
primary cell
103
in vitro differentiated cells
74
cell line
7
stem cell
Organ
201
kidney
181
heart
92
bone element
73
liver
72
pancreas
53
eye
49
connective tissue
48
adipose tissue
46
blood vessel
46
vasculature
39
artery
39
brain
38
musculature of body
20
lung
15
epithelium
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
763
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
156
GRCh38
107
hg19
Lab
535
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
1
missing controlled_by
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
limb
files.file_type!
bam
BIOSAMPLE
ASSAY
858 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
snDrop-seq
DNase-seq
tissue
kidney
75
64
49
6
1
1
islet of Langerhans
30
40
26
7
4
3
1
bone element
84
liver
20
23
1
20
1
1
1
3
left cardiac atrium
40
18
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