Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1017
total RNA-seq
841
ChIP-seq
173
ATAC-seq
173
single cell RNA-seq
142
DNase-seq
87
RNA microarray
26
WGBS
26
snATAC-seq
25
pCHi-C
16
small RNA-seq
12
Hi-C
11
RRBS
4
FAIRE-seq
3
snDrop-seq
Assay category
1206
Transcription
841
DNA binding
345
DNA accessibility
37
DNA methylation
12
3D chromatin structure
Target of assay
579
histone modification
578
histone
309
narrow histone mark
269
broad histone mark
168
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
539
February, 2021
284
August, 2017
229
August, 2021
193
May, 2020
173
October, 2019
131
June, 2019
120
July, 2018
108
May, 2019
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
72
July, 2019
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1793
bam
1681
bigWig
1065
tsv
829
bed narrowPeak
477
bigBed narrowPeak
377
fastq
238
tagAlign
177
bed broadPeak
169
bed bed3+
153
txt
140
bigBed broadPeak
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2547
Homo sapiens
Biosample type
2556
tissue
1000
primary cell
650
cell line
378
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
483
pancreas
361
liver
299
kidney
277
heart
264
brain
150
bone element
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2477
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1728
GRCh38
1626
hg19
Lab
2226
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
limb
month_released!
February, 2023
BIOSAMPLE
ASSAY
2556 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
293
70
57
1
5
4
3
1
1
adipose tissue
382
2
2
3
1
liver
167
145
20
1
2
3
1
1
1
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
+ See 158 more…
See all biosamples
Download