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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
5
ChIP-seq
3
total RNA-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
38
DNA accessibility
5
DNA binding
5
Transcription
Target of assay
2
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
February, 2021
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
June, 2019
1
February, 2020
Available data
41
bed narrowPeak
10
bam
8
bigWig
5
bigBed narrowPeak
5
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
48
Homo sapiens
Biosample type
46
tissue
2
primary cell
Organ
904
pancreas
788
liver
486
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
43
GRCh38
8
hg19
Lab
48
AMP-T2D consortium
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
organ_slims!
limb
month_released!
February, 2021
BIOSAMPLE
ASSAY
48 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
36
5
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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