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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
total RNA-seq
12
ATAC-seq
12
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
58
Transcription
15
DNA accessibility
12
DNA binding
2
3D chromatin structure
Target of assay
12
histone
12
histone modification
7
broad histone mark
5
narrow histone mark
Date released
66
February, 2021
16
October, 2019
4
February, 2023
1
March, 2020
Available data
81
bam
73
bigWig
58
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
87
Homo sapiens
Biosample type
70
tissue
17
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
87
AMP
Genome assembly (visualization)
87
hg19
78
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
BIOSAMPLE
ASSAY
87 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
tissue
bone tissue
58
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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primary cell
endothelial cell of umbilical vein
12
2
2
1
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