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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
Assay category
18
DNA binding
Target of assay
730
histone
730
histone modification
388
narrow histone mark
342
broad histone mark
223
transcription factor
217
control
69
RNA binding protein
23
recombinant protein
18
chromatin remodeller
3
other context
3
other post-translational modification
Date released
November, 2017
7
November, 2018
6
January, 2019
August, 2017
3
December, 2017
2
December, 2018
Available data
18
bam
18
bed narrowPeak
18
bigBed narrowPeak
18
bigWig
18
fastq
Organism
18
Homo sapiens
Biosample type
15
cell line
2
tissue
1
in vitro differentiated cells
Organ
10
blood
10
bodily fluid
8
liver
1
epithelium
Project
18
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
18
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
November, 2017
August, 2017
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
cell line
GM12878
10
HepG2
5
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
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