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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
WGBS
19
RRBS
1
DNAme array
Assay category
485
Transcription
479
DNA accessibility
361
DNA binding
74
DNA methylation
26
3D chromatin structure
Date released
41
May, 2022
17
July, 2019
9
August, 2017
6
February, 2021
1
May, 2021
Available data
41
zippedFastqFolder
33
bed bedMethyl
33
bigBed bedMethyl
18
fastq
17
bam
bigWig
6
tsv
Organism
74
Homo sapiens
Biosample type
57
primary cell
17
tissue
Organ
53
epithelium
49
pancreas
liver
5
connective tissue
5
musculature of body
4
adipose tissue
4
heart
4
kidney
2
brain
2
vasculature
1
blood vessel
1
eye
1
pericardium
Project
47
HPAP
27
AMP
Genome assembly (visualization)
17
hg19
Lab
47
Klaus Kaestner, Upenn
27
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Stephen Parker, UMich
organ_slims!
liver
files.file_type!
bigWig
BIOSAMPLE
ASSAY
74 results
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WGBS
RRBS
DNAme array
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
+ See 7 more…
tissue
skeletal muscle tissue
4
heart left ventricle
2
1
subcutaneous abdominal adipose tissue
3
adipose tissue
1
aorta
1
+ See 5 more…
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