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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
5
ChIP-seq
DNase-seq
4
pCHi-C
RRBS
Assay category
28
DNA accessibility
19
Transcription
5
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
21
October, 2019
3
June, 2019
1
February, 2020
Available data
29
bed narrowPeak
5
tsv
3
bam
2
bigBed narrowPeak
2
bigWig
Organism
56
Homo sapiens
Biosample type
53
tissue
3
primary cell
Organ
935
pancreas
783
liver
674
connective tissue
499
epithelium
489
adipose tissue
361
heart
269
kidney
252
brain
224
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
58
musculature of body
56
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
29
hg19
2
GRCh38
Lab
56
AMP-T2D consortium
lab.title!
Stephen Parker, UMich
assay_title!
RRBS
DNase-seq
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
pCHi-C
tissue
islet of Langerhans
1
14
2
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
3
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